What is the Difference Between CRISPR and RNAi?

What is CRISPR

CRISPR (clustered regularly interspaced short palindromic repeats) is a family of DNA sequences that naturally occur in the genome of prokaryotes including bacteria. These repeats are derived from the viruses that infect prokaryotes. Therefore, they can be used to recognize similar DNA sequences, destroying similar DNA sequences from viruses in the subsequent infections. Thus, CRISPR becomes an antiviral defense system in prokaryotes. Here, an enzyme known as Cas9 (CRISPR-associated protein 9) uses CRISPR as a guide sequence to recognize complementary strands and then, it cleaves the complementary sequence.


What is RNAi

RNAi (RNA interference) is a biological process which regulates gene expression at the post-transcriptional level through degrading target mRNA. It is one of the most widely used approaches to study gene function in reverse genetics. Here, the two main types of small RNA molecules involved in the process are micro RNA (miRNA) and small interfering RNA (siRNA). Another form of small RNA involved in RNAi, mimicking the function of miRNA is short hairpin RNA (shRNA). However, shRNA has to be artificially introduced to the system through delivery systems. Both miRNA and shRNA form double-stranded RNA by hybridization with the target mRNA, which is complementary to the small RNA sequence


RNA interference (RNAi) is a naturally occurring mechanism that leads to the “silencing” of genes.In consequence, the respective protein is no longer synthesised. In nature, this mechanism is used for the regulation of specific genes and is also applied as a defence against viruses. In research, this technique can be used for loss-of-function studies where a gene is specifically silenced and the impact of this loss is analysed in cells or whole organisms. This can be performed under normal conditions or in the context of a disease.
The importance of this technology is reflected by the fact that the 2006 Nobel prize for medicine was awarded for the discovery of RNA interference by Craig Mello and Andrew Fire.

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